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2020-03-18 Database description: This site provides a comprehensive resource of microRNA target predictions and expression profiles. The target predictions of microRNAs are performed by a development of the miRanda algorithm, and microRNA expression profiles are derived from a comprehensive sequencing project of a large set of mammalian tissues and cell lines of normal and disease origin. To reference information from this database, please cite one of the following papers: Agarwal V, Bell GW, Nam J, Bartel DP. Predicting effective microRNA target sites in mammalian mRNAs. eLife, 4:e05005, (2015). eLife Lens view. García DM, Baek D, Shin C, Bell GW, Grimson A, Bartel DP. 2006-02-01 The database web interface allows verifying whether a given microRNA is reported to be intragenic or intergenic in one or more species. For intragenic microRNAs, it is possible to verify whether or not a particular microRNA is located within the same gene in different species as well as to establish whether its position within the host gene (e.g., exonic, intronic, etc.) is also conserved.

Microrna database

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PmiRKB (Plant microRNA Knowledge Base) includes the miRNAs of two model plants, Arabidopsis (A. thaliana) and rice (O. sativa). Four major functional modules such as SNPs, Pri-miR, MiR–Tar, Self-reg are included.

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Cell 129, 1401–1414 (2007). CAS PubMed PubMed Central Google Scholar 32. Ha, M. & Kim, V. N. Regulation of target gene-microRNA associations from low-throughput or high-throughput microRNA targeting studies: Category: physical interactions: Resource: MiRTarBase Citation(s) Hsu, SD et al. (2011) miRTarBase: a database curates experimentally validated microRNA-target interactions.

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Microrna database

2020-11-18 · MirGeneDB is a database of microRNA genes that have been validated and annotated by a group of European and American researchers , according an annotation standard . MirGeneDB 2.0 contains 1275 microRNA families across the 45 metazoan species, including 556 human, 447 mouse, 270 chicken and 390 zebrafish genes . Szczesniak MW, Makalowska I (2014) miRNEST 2.0: a database of plant and animal microRNAs.

To date, the database has accumulated >13,404 validated MTIs from 11,021 articles from manual curations. 2020-06-15 Search method: BLASTN SSEARCH.
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Microrna database

AcceGen provides over 5,000 pre-designed Human miRNA (hsa-miR) Agomir/Antagomir, Mouse miRNA (mmu-miR) Agomir/Antagomir and Rat miRNA (rno-miR) Agomir/Antagomir for worldwide MicroRNA research and diagnostics tools. 1.miRbasehttp://www.mirbase.org/2.miRDBhttp://www.mirdb.org/miRDB/policy.html3.miRandahttp://www.mic HMDD (the Human microRNA Disease Database) is a database that curated experiment-supported evidence for human microRNA (miRNA) and disease  Jun 1, 2015 Here we present the Dietary MicroRNA Databases (DMD), the first repository for archiving and analyzing the published and novel microRNAs  Nov 4, 2019 Thus, despite integrating information from different databases can be useful to cut down the number of miRNA-target interactions to be  Welcome to the plant microRNA database (PMRD) homepage! MicroRNAs play an essential role in regulating plant growth and development and recently  miRCancer : microRNA Cancer Association Database miRCancer provides comprehensive collection of microRNA (miRNA) expression profiles in various human  Aug 31, 2019 Another new database feature is the prediction of cell-specific miRNA targets. miRDB now hosts the expression profiles of over 1000 cell lines  Analyze the number of significant pathways per miRNA for the different target Analyze heat maps of significant miRNA signatures for the pathway databases. Select from a database Users can now select the original database for miRNA gene target analysis (07/06/2020);; Our miRNet 2.0 paper is now accepted by  The miRBase Sequence database is the primary repository for published microRNA (miRNA) sequence and annotation data.

Materials: Buffy CoatcDNA / mRNADNAmicroRNAPBMCPeripheral blood cellsPlasmaRNAWhole Blood  Sample collection types:Healthcare sample collection, Research sample collection. Juridical person:Västra Götalandsregionen  I am Molecular Biologist by training and use bioinformatics methods for genome wide pan-metazoan miRNA complement analyses. I am experienced in working  keywords = "MicroRNA, Sequencing, Music-performance, Gene regulation, TRANSCRIPTOME, DATABASE, EXERCISE, BEHAVIOR, 3111 Biomedicine",. eWRC-results.com - rally database. PDF) Significant changes in circulating microRNA by dietary Varsågod Originalet Mikael Walfridsson Pastor pic.
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Microrna database

HMDD (the Human microRNA Disease Database) is a resource that curates experimentally supported miRNA and disease association data. HMDD was originally constructed on December 2007 and was updated more than 30 times during the past ten years. On June 2013, we released HMDD version 2 (HMDD v2.0). PmiRKB (Plant microRNA Knowledge Base) includes the miRNAs of two model plants, Arabidopsis (A.

Se hela listan på academic.oup.com Database of experimentally supported microRNA targets TarBase v7.0 is the largest available manually curated target database, indexing more than 65,000 miRNA-gene interactions, 16.5-175-fold more than any other available implementation. Se hela listan på academic.oup.com In bioinformatics, miRBase is a biological database that acts as an archive of microRNA sequences and annotations. As of September 2010 it contained information about 15,172 microRNAs. This number has risen to 38,589 by March 2018. The miRBase registry provides a centralised system for assigning new names to microRNA genes. (2009) High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera.
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Contains also a search and comparison engine for sequences and a target database. This microRNA database and microRNA targets databases is a compilation of databases and web portals and servers used for microRNAs and their targets. miRNEST is an integrative collection of animal, plant and virus microRNA data. The database provides you with: a) microRNAs from our high-throughput  Jun 23, 2017 Functional pathway analysis is largely dependent on databases such as miRTarBase which have identified miRNA target genes that have been  May 6, 2016 Some miRNA target gene databases, such as DIANA-miRGen [44], miRWalk [45], miRNAMap [46] and microRNA.org [47], also store target genes  Dec 1, 2011 sive database of animal, plant and virus microRNAs. The core part of Animal and plant miRNA genes are transcribed by RNA polymerase II  Integration of multiple microRNA-target databases with their disease and drug associations. Bioconductor version: Release (3.12). A collection of microRNAs/  Feb 26, 2019 MicroRNA Profiling.

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This microRNA database and microRNA targets databases is a compilation of databases and web portals and servers used for microRNAs and their targets. MicroRNAs (miRNAs) represent an important class of small non-coding RNAs (ncRNAs) that regulate gene expression by targeting messenger RNAs.